
Jim remembers Bones' warning and is reluctant in trusting Silver, a cyborg. The crew is an odd-looking, suspicious bunch or as Amelia described them "A ludicrous parcel of driveling galoots" who are secretly led by John Silver, the ship's cook who trains Jim as a cabin boy and owns a cute, cosmic, pink blob named Morph who can take the shape of whatever he chooses.

The ship is captained by the feisty, feminine, feline Captain Amelia along with her First Mate, Mr. Jim and Doppler soon set off to Montressor Spaceport where the doctor has commissioned a ship called RLS Legacy complete with a crew to take them on this one heck of a voyage. Marika, Chiaki, Jim, his mother and Doppler manage to escape along with the spherical orb which later turns out to be a holographic map, showing the way to the one and only, Treasure Planet. Bones soon dies and suddenly, a bunch of marauding pirates ambush the inn, burning it to the ground whilst trying to find the sphere. His name is Billy Bones, Jim helps him inside, and the alien hands him a mysterious sphere, warning him to "Beware the cyborg" in his last breaths.

That night, a spaceship crash-lands on the port outside the inn and an old, injured salamander-like being clambers out. He is escorted to the Benbow (an inn run by Jim's mother), much to his mother's disappointment and retires to the inn's roof, where he overhears Sarah venting her frustration with Jim's behavior to the family's canine friend, Dr. On Montressor, Jim still believes in the stories of Treasure Planet but has become quite a trouble-maker, rebel, and hoodlum (in the eyes of other people) with a hobby for 'solar-surfing,' a combination of sky-surfing and wind-surfing on a rocket powered board with a solar sail, in this case he happened to be surfing in a restricted construction area, where he got caught by robotic cops.

Gruier goes to the ceremony and makes Marika and Knight, "Lady Marika Kato".

The Bentenmaru, the Barbaroosa and the Odette II along with the frontier pirates, the Serenity Defence Forces, and the Parabellum arrived in the Andromeda Galaxy to meet the Nirvana and the Vandread pilots Hibiki Tokai, Dita Liebely, Meia Gisborn and Jura Basil Eden. 12 years later, on Sea of the Morning Star in the Tau Ceti System, Marika Kato, Chiaki Kurihara, the Hakuoh Academy Space Yacht Club and the Bentenmaru crew receive a mission briefing from President of Earth to go to the Andromeda Galaxy and bring Men of Taraaku and Women of Mejeiru to Earth. Sarah (Jim's mother) bursts in emphasizing that she thought he had fallen asleep "an hour ago". Treasure Planet begins with the young Jim Hawkins who is secretly reading the story of the notorious Captain Flint, the creator of the 'legendary' planet, past his bedtime.
